My husband and I are currently traveling in Puerto Rico. I desperately want to go zip-lining in the rainforest; he wants to show me the phosphorescent bays (also called bioluminescent bays). We may not make it there this trip, but I have spent some time reading about them. Holy amaz-a-balls. They are gorgeous!
The protist dinoflagellate lives in the bays and upon a drop in pH (more easily defined on tours as "agitation of the waters") a molecule binds to a protein in the organism and emits a blue light. These little creatures can use this to scare their predators - very cool. For humans, the mechanism is beautiful to watch.
A few of these bays exist in Puerto Rico and are really popular destination spots. You can read more about them here:
Article on the bays: http://suite101.com/article/bioluminescent-bays-of-puerto-rico-a12954
Website for one of the bays: http://www.biobay.com/
Here are a few pictures:
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